PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.17G050300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 732aa    MW: 80635.2 Da    PI: 7.3407
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.17G050300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-24150251199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++       +  ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F 
  Manes.17G050300.2.p 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyaQ--QRPSQELVAKDLHGFQWRFRHIYRGQPRRHLLTTGWSAFVNKKKLLSGDAVLFL 237
                          99****************************9743..345679************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+++++r+
  Manes.17G050300.2.p 238 --RGDDGELRLGIRRA 251
                          ..3489999****996 PP
2Auxin_resp122.62.8e-40277357282
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          ++a+st+svF+++YnPr+s+seF+++++k++k+l++++s+GmRfkm+feted++err++G+++g+sd+dp rWp SkWr+L
  Manes.17G050300.2.p 277 VNAMSTRSVFNIYYNPRSSSSEFIIPLHKFLKSLDHSFSIGMRFKMRFETEDAAERRYTGIITGISDIDPARWPSSKWRCL 357
                          689*****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-41143252IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-39144253IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-22148250No hitNo description
PfamPF023623.0E-22150251IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239150252IPR003340B3 DNA binding domain
SMARTSM010192.7E-22150252IPR003340B3 DNA binding domain
PfamPF065072.1E-35277357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MVGIIDLNTT EEDETTPSSG SLSSPSSSSA SALSASNSSP PGSSSVCLEL WHACAGPLIS  60
LPKKGSVVVY FPQGHLEQLP DLPLAAYDLP SHIFCRVVDV KLHAEASNDD VYAQVSLAPE  120
SEMLKKGKNE GDGEEEDMEA AVKSTTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD  180
YAQQRPSQEL VAKDLHGFQW RFRHIYRGQP RRHLLTTGWS AFVNKKKLLS GDAVLFLRGD  240
DGELRLGIRR AAQVKCGATL PALCSQQLNH STFTDIVNAM STRSVFNIYY NPRSSSSEFI  300
IPLHKFLKSL DHSFSIGMRF KMRFETEDAA ERRYTGIITG ISDIDPARWP SSKWRCLLVR  360
WDDTETSRHS RVSPWEIEPS GPLSSSTSFM APVLKRSRSG LPSLKPEFPV PDGIGVSDFG  420
ESSRFQKVLQ GQEILSFNTL YDGVDQNRRP SETRRCFPST VNAGLAKTRN GDRGPVVNSD  480
VSRESIGFCE SFRFHKVLQG QEIIPSSSFG RASTTATEVC ENGCFGISNG EQVTRSRNGW  540
SAMMQGYNTH MRPSTQVPSP SSVLMFQQAS NHVSYQSPAY NFSEQKEQGA SIQGWFHNAE  600
TCGEKRLSSH SERIIGRNDR WGSSSFGISH NHIQHCISPL VAQSTFKDGQ DIVASCKSSC  660
RLFGFQLTED RHVANKDDDG PITMTSLNPG SSFLPRAAEQ FHLKPPAITN AVGSNCTKGI  720
LQQHPENYHI Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-117333861361Auxin response factor 1
4ldy_B1e-117333861361Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002522498.20.0PREDICTED: auxin response factor 3
SwissprotO236610.0ARFC_ARATH; Auxin response factor 3
TrEMBLB9S9290.0B9S929_RICCO; Auxin response factor
STRINGPOPTR_0011s05830.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.10.0ARF family protein